STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4792Phage_integrase domain-containing protein; Unnamed protein product; Highly similar to the C-terminal region of Int protein. (144 aa)    
Predicted Functional Partners:
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exchanges the t [...]
  
 
 
 0.718
plu0260
Phage_integrase domain-containing protein; Unnamed protein product; Similar to fimbriae regulatory recombinase protein FimB of Escherichia coli, involved in phase variation; regulator for FimA in Escherichia coli.
  
   
 0.648
xerD
Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...]
  
   
 0.641
plu1125
Unnamed protein product; Similar to integrase/recombinase; Belongs to the 'phage' integrase family.
  
   
 0.629
plu3579
Unnamed protein product; Similar to integrase/recombinase; Belongs to the 'phage' integrase family.
  
   
 0.629
plu3588
Unnamed protein product; Similar to integrase/recombinase.
  
   
 0.629
plu3688
Unnamed protein product; Similar to integrase/recombinase.
  
   
 0.629
plu0543
Phage_integrase domain-containing protein; Unnamed protein product; Similar to integrase/recombinase; Belongs to the 'phage' integrase family.
  
   
 0.627
plu1135
Unnamed protein product; Similar to integrase/recombinase.
  
   
 0.627
plu1143
Unnamed protein product; Similar to integrase/recombinase.
  
   
 0.627
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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