STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpxATwo-component sensor kinase. (456 aa)    
Predicted Functional Partners:
cpxR
Two-component response regulator.
 
 0.999
cutF
Copper homeostasis protein CutF precursor.
     
 0.926
phoP
Two-component response regulator PhoP.
 
 
 0.913
ompR
Two-component response regulator.
 
 
 0.898
baeR
Two-component response regulator.
 
 
 0.898
arcB
Aerobic respiration control sensor protein.
 
 
0.865
kdpE
Transcriptional regulatory protein of kdp operon.
 
 
 0.833
cpxP
Periplasmic protein precursor.
 
   
 0.807
arcA
Two-component system, OmpR family, aerobic respiration control protein ArcA; Negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) (dye resistance protein).
 
 
 0.786
hnr
Hnr protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
 
 
   0.756
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.