Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wblJWblJ protein; Some similarities with glucosyltransferases. (336 aa)    
Predicted Functional Partners:
wblF
WblF protein; Similar to putative glycosyl transferase.
   
 0.946
wblM
WblM protein; Similar to TrsG which plays a putative role in galactose modification.
 
   
 0.825
wblK
WblK protein; Highly similar to putative hydro-lyase; Belongs to the DegT/DnrJ/EryC1 family.
       0.779
arcB
Aerobic respiration control sensor protein.
  
 
 0.596
plu2411
Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with glycosyltransferase.
 
   
 0.575
wzc
Tyrosine-protein kinase Wzc.
 
  
 0.526
plu3916
Unnamed protein product; Similar to creatininase (creatinine amidohydrolase).
  
  
 0.505
plu2797
Unnamed protein product; Hypothetical protein.
  
 
 0.495
plu3275
SseB_C domain-containing protein; Unnamed protein product; Some similarities with rhodanese-like protein SseB of Escherichia coli.
  
 
 0.485
plu3018
Glyco_trans_2-like domain-containing protein; Unnamed protein product; Similar to putative galactosyl transferase or beta-glucosyltransferase.
 
   
 0.472
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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