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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wblKWblK protein; Highly similar to putative hydro-lyase; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)    
Predicted Functional Partners:
wblM
WblM protein; Similar to TrsG which plays a putative role in galactose modification.
 
  
 0.932
wblF
WblF protein; Similar to putative glycosyl transferase.
  
 0.906
wblJ
WblJ protein; Some similarities with glucosyltransferases.
     
 0.781
wblI
WblI protein; Similar to probable glycosyltransferase.
 
  
 0.683
pbgP3
PbgP3 protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.
 
  
 0.572
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.499
wblB
WblB protein; Similar to putative dehydrogenase.
 
  
 0.490
wblA
WblA protein; Similar to putative UDP-glucose/GDP-mannose dehydrogenase.
 
  
 0.442
wblY
WblY protein; Similar to sugar-phosphate nucleotidyltransferases.
  
  
 0.440
wblP
WblP protein.
  
 0.439
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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