Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rfaGLipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I). (376 aa)    
Predicted Functional Partners:
rfaQ
Lipopolysaccharide core biosynthesis glycosyl transferase RfaQ.
 
 
 0.998
walW
WalW protein; Similar to putative glycosyltransferase.
 
  
 0.976
plu0452
Unnamed protein product; Similar to lipopolysaccharide 1,6-galactosyltransferase (UDP-D-galactose--(Glucosyl)lipopolysaccharide-alpha-1, 3-D-galactosyltransferase), RfaB protein of Escherichia coli.
 
 
 0.968
rfaF
ADP-heptose--LPS heptosyltransferase II.
 
 
 0.960
rfaC
Lipopolysaccharide heptosyltransferase-1.
 
 
 0.957
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.950
rfaL
O-antigen ligase RfaL.
  
 
 0.931
walV
WalW protein.
 
     0.809
walR
WalR protein; Some similarities with lipopolysaccharide biosynthesis protein and probable hexosyltransferase.
  
     0.720
plu2499
NAD(P)-bd_dom domain-containing protein; Unnamed protein product; Similar to unknown protein WbnF of Escherichia coli and to nucleotide sugar epimerase.
 
  
 0.521
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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