STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaLO-antigen ligase RfaL. (408 aa)    
Predicted Functional Partners:
rfaG
Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I).
  
 
 0.926
rfaC
Lipopolysaccharide heptosyltransferase-1.
  
 
 0.922
rfaF
ADP-heptose--LPS heptosyltransferase II.
  
 
 0.921
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.920
rfaQ
Lipopolysaccharide core biosynthesis glycosyl transferase RfaQ.
  
 
 0.917
plu0452
Unnamed protein product; Similar to lipopolysaccharide 1,6-galactosyltransferase (UDP-D-galactose--(Glucosyl)lipopolysaccharide-alpha-1, 3-D-galactosyltransferase), RfaB protein of Escherichia coli.
  
 
 0.916
walO
WalO protein; Some similarities with lipopolysaccharide biosynthesis protein.
  
 
 0.913
wblM
WblM protein; Similar to TrsG which plays a putative role in galactose modification.
  
  
 0.703
wblF
WblF protein; Similar to putative glycosyl transferase.
  
  
 0.671
mutM
formamidopyrimidine-DNA glycosylase (FAPY-DNA glycosylase); Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.551
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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