Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
walMWalM protein; Some similarities with glycosyl transferase. (391 aa)    
Predicted Functional Partners:
walN
WalN protein; Some similarities with C-terminal region of probable hexosyltransferase and LPS biosynthesis RfbU related protein.
 
     0.943
walO
WalO protein; Some similarities with lipopolysaccharide biosynthesis protein.
 
    0.888
walR
WalR protein; Some similarities with lipopolysaccharide biosynthesis protein and probable hexosyltransferase.
 
     0.837
plu3926
Unnamed protein product; Some similarities with ribonuclease; Belongs to the RNase T2 family.
  
     0.682
plu3814
MFS domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.621
wzxA
WzxA protein; Some similarities with O-antigen translocase. Putative transmembrane secreted protein.
 
    0.514
plu3577
DUF637 domain-containing protein; Unnamed protein product; Some similarities with hemagglutinin/hemolysin-related proteins. Putative transmembrane protein.
  
     0.507
rfaG
Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I).
  
     0.474
plu1030
AAA_31 domain-containing protein; Unnamed protein product; Similar to chromosome partitioning related protein SOJ-like protein.
  
    0.466
plu0228
PMT_2 domain-containing protein; Truncated gene. Some similarities with binding protein component of ABC transporter.
 
     0.464
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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