STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
walMWalM protein; Some similarities with glycosyl transferase. (391 aa)    
Predicted Functional Partners:
walN
WalN protein; Some similarities with C-terminal region of probable hexosyltransferase and LPS biosynthesis RfbU related protein.
 
     0.943
walO
WalO protein; Some similarities with lipopolysaccharide biosynthesis protein.
 
  
 0.876
walR
WalR protein; Some similarities with lipopolysaccharide biosynthesis protein and probable hexosyltransferase.
 
     0.837
plu3926
Unnamed protein product; Some similarities with ribonuclease; Belongs to the RNase T2 family.
  
     0.682
plu3814
MFS domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.621
plu3577
DUF637 domain-containing protein; Unnamed protein product; Some similarities with hemagglutinin/hemolysin-related proteins. Putative transmembrane protein.
  
     0.507
wzxA
WzxA protein; Some similarities with O-antigen translocase. Putative transmembrane secreted protein.
 
  
 0.505
rfaG
Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I).
  
     0.474
plu0228
PMT_2 domain-containing protein; Truncated gene. Some similarities with binding protein component of ABC transporter.
 
   
 0.471
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.471
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.