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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4883PfkB domain-containing protein; Unnamed protein product; Similar to sugar kinase; Belongs to the carbohydrate kinase PfkB family. (306 aa)    
Predicted Functional Partners:
rbsD
High affinity ribose transport protein RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.728
plu4882
MFS domain-containing protein; Unnamed protein product; Similar to macrolide-efflux protein.
       0.671
plu1805
Unnamed protein product; Similar to myo-inositol catabolism IolD of Bacillus subtilis; Belongs to the TPP enzyme family.
 
  
 0.553
iunH
Inosine-uridine preferring nucleoside hydrolase (IU-nucleoside hydrolase) (purine nucleosidase); Belongs to the IUNH family.
 
  
 0.537
rbsB
D-ribose-binding periplasmic protein precursor RbsB.
 
  
 0.523
plu1799
Unnamed protein product; Similar to myo-inositol catabolism iolB of Bacillus subtilis.
  
  
 0.515
plu2773
IU_nuc_hydro domain-containing protein; Unnamed protein product; Similar to nucleoside hydrolase.
 
  
 0.511
plu4881
Unnamed protein product; Weakly similar to hypothetical protein.
       0.474
plu0585
Unnamed protein product; Similar to beta-glucoside permease IIABC component (phosphotransferase enzyme II, ABC component). Putative transmembrane protein.
  
  
 0.466
plu0727
AP_endonuc_2 domain-containing protein; Unnamed protein product; Some similarities with D-tagatose 3-epimerase-related protein.
 
  
 0.445
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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