Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
plu4894Methyltransf_2 domain-containing protein; Unnamed protein product; Some similarities with O-methyltransferase. (317 aa)    
Predicted Functional Partners:
plu2236
FAD_binding_3 domain-containing protein; Unnamed protein product; Some similarities with probable monooxygenase.
  
  
 0.626
plu1743
FAD_binding_3 domain-containing protein; Unnamed protein product; Similar to putative monooxygenase.
  
  
 0.605
entB
Isochorismatase (2,3-dihydro-2,3-dihydroxybenzoate synthetase).
  
    0.546
plu1322
FAD_binding_3 domain-containing protein; Unnamed protein product; Similar to 2.4-dihydroxybenzoate monooxygenase.
  
     0.459
plu4336
Dioxygenase; Unnamed protein product; Some similarities with dioxygenase.
  
     0.458
pdl
Pdl protein; Similar to putative lipase of Photorhabdus luminescens, strain W14.
  
     0.455
ISPlu1A
Transposase, IS30 family.
       0.414
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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