Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4903AAA_23 domain-containing protein; Unnamed protein product; Similar to unknown protein. (887 aa)    
Predicted Functional Partners:
plu4904
Unnamed protein product; Similar to ATP-dependent DNA helicase.
 
     0.855
plu0233
N6_Mtase domain-containing protein; Unnamed protein product; Similar to unknown protein and some weak similarities with deoxyribonuclease/methylase.
  
     0.726
plu4902
Unnamed protein product; Similar to unknown protein Z3269 of Escherichia coli O157:H7.
       0.598
pilV
PilV protein; Similar to type IV prepilin PilV protein.
  
     0.572
plu4210
Uncharacterized protein; Truncated gene. Similar to the N terminal part of unknown proteins of Photorhabdus luminescens.
  
     0.509
plu4220
Unnamed protein product; Highly similar to unknown protein of Photorhabdus luminescens.
  
     0.481
plu4467
Unnamed protein product; Similar to unknown protein.
  
     0.400
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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