Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
potD1Spermidine/putrescine ABC transporter substrate binding protein. (538 aa)    
Predicted Functional Partners:
potC
Spermidine/putrescine ABC transporter permease protein.
  
 0.999
potB
Spermidine/putrescine ABC transporter permease protein.
  
 
 0.993
potA
Spermidine/putrescine transport ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.992
potD2
Spermidine/putrescine ABC transporter substrate binding protein.
 
  
 
0.951
ACF07056.1
ABC transporter permease protein.
 
   
 0.804
ACF07455.1
ABC transporter permease protein.
 
    0.779
secD
Protein-export membrane protein SecD.
 
     0.775
ACF07237.1
Putative esterase or lipase, membrane protein.
 
     0.774
ACF07558.1
Hypothetical lipoprotein.
  
     0.774
ACF07061.1
Mycoplasma hominis P80-related membrane protein.
  
     0.773
Your Current Organism:
Mycoplasma arthritidis
NCBI taxonomy Id: 243272
Other names: M. arthritidis 158L3-1, Mycoplasma arthritidis 158L3-1, Mycoplasma arthritidis str. 158L3-1, Mycoplasma arthritidis strain 158L3-1
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