STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potD2Spermidine/putrescine ABC transporter substrate binding protein. (533 aa)    
Predicted Functional Partners:
potC
Spermidine/putrescine ABC transporter permease protein.
  
 
 0.984
potA
Spermidine/putrescine transport ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.979
potB
Spermidine/putrescine ABC transporter permease protein.
  
 
 0.964
potD1
Spermidine/putrescine ABC transporter substrate binding protein.
 
  
 
0.952
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.795
ACF07056.1
ABC transporter permease protein.
 
   
 0.787
ACF07417.1
Conserved hypothetical protein.
       0.787
secD
Protein-export membrane protein SecD.
 
    0.780
ACF07455.1
ABC transporter permease protein.
 
    0.779
ACF07061.1
Mycoplasma hominis P80-related membrane protein.
  
     0.774
Your Current Organism:
Mycoplasma arthritidis
NCBI taxonomy Id: 243272
Other names: M. arthritidis 158L3-1, Mycoplasma arthritidis 158L3-1, Mycoplasma arthritidis str. 158L3-1, Mycoplasma arthritidis strain 158L3-1
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