Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xynASimilar to PID:559960 SP:Q60037 GB:AE000512 percent identity: 100.00; identified by sequence similarity; putative. (1059 aa)    
Predicted Functional Partners:
aguA
Alpha-glucuronidase; Alpha-glucuronidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose. It catalyzes the cleavage of alpha-(1->2)-glycosidic bond of the 4-O-methyl-D-glucuronic acid side chain of xylan and releases 4-O-methylglucuronic acid from xylan. Belongs to the glycosyl hydrolase 67 family.
 
   
 0.878
TM_0305
Endoglucanase, putative; Similar to GP:3560020 percent identity: 55.11; identified by sequence similarity; putative.
 
 
 0.865
pelA
Pectate lyase; Cleaves unsaturated trigalacturonate from pectin. Activity is highest towards polygalacturonic acid, activity on methylated pectins decreases with an increasing degree of methylation.
  
   
 0.735
TM_1201
Arabinogalactan endo-1,4-beta-galactosidase, putative; Similar to GB:L03425 SP:P48843 PID:142574 percent identity: 66.76; identified by sequence similarity; putative.
  
     0.713
TM_1752
Endoglucanase; Similar to SP:P23340 percent identity: 51.51; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.672
TM_0076
Xylosidase; Similar to PID:2429092 percent identity: 98.07; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 3 family.
    
 0.646
TM_1751
Endoglucanase; Similar to SP:P23340 percent identity: 52.35; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.635
TM_0062
Hypothetical protein; Identified by sequence similarity; putative.
       0.601
TM_0024
Laminarinase; Similar to PID:1143599 percent identity: 95.48; identified by sequence similarity; putative.
 
   
 0.567
TM_1074
Hypothetical protein; Identified by sequence similarity; putative.
 
 
 0.557
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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