STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TM_0110Transcriptional regulator, XylR-related; Similar to PID:1208894 SP:Q44406 percent identity: 59.47; identified by sequence similarity; putative. (378 aa)    
Predicted Functional Partners:
TM_0111
Alcohol dehydrogenase, iron-containing; Similar to SP:P71017 PID:1524393 GB:AL009126 percent identity: 54.08; identified by sequence similarity; putative.
    
 0.828
TM_0112
Sugar ABC transporter, permease protein; Similar to SP:P36948 GB:Z25798 PID:397498 PID:1894758 GB:AL009126 percent identity: 65.33; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
  
    0.735
TM_0114
Sugar ABC transporter, periplasmic sugar-binding protein; Similar to SP:P36949 GB:Z25798 PID:397499 PID:1894757 GB:AL009126 percent identity: 51.00; identified by sequence similarity; putative.
  
  
 0.705
TM_0113
xylU-related protein; Similar to GP:2920659 percent identity: 67.66; identified by sequence similarity; putative.
       0.693
xylB
Sugar kinase, FGGY family; Similar to SP:P27155 PID:48836 percent identity: 59.50; identified by sequence similarity; putative.
  
  
 0.675
rbsA1
Sugar ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.653
TM_0032
Transcriptional regulator, XylR-related; Similar to PID:1208894 SP:Q44406 percent identity: 51.23; identified by sequence similarity; putative.
  
 
0.631
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.597
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction. Phosphorylates propionate (54%) in addition to acetate (100%). Uses GTP (100%), ITP (163%), UTP (56%), and CTP (21%) as phosphoryl donors in addition to ATP (100%).
     
 0.586
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
 
 0.550
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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