STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pelAPectate lyase; Cleaves unsaturated trigalacturonate from pectin. Activity is highest towards polygalacturonic acid, activity on methylated pectins decreases with an increasing degree of methylation. (367 aa)    
Predicted Functional Partners:
TM_0305
Endoglucanase, putative; Similar to GP:3560020 percent identity: 55.11; identified by sequence similarity; putative.
 
 
 0.839
TM_0437
exo-poly-alpha-D-galacturonosidase, putative; Similar to GB:M31308 SP:P15922 PID:148447 percent identity: 49.48; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.811
TM_0070
Endo-1,4-beta-xylanase B; Similar to PID:1143603 SP:Q60041 percent identity: 93.93; identified by sequence similarity; putative.
  
   
 0.785
xynA
Similar to PID:559960 SP:Q60037 GB:AE000512 percent identity: 100.00; identified by sequence similarity; putative.
  
   
 0.740
TM_1201
Arabinogalactan endo-1,4-beta-galactosidase, putative; Similar to GB:L03425 SP:P48843 PID:142574 percent identity: 66.76; identified by sequence similarity; putative.
  
   
 0.736
TM_1227
Endo-1,4-beta-mannosidase; Similar to PID:1679597 percent identity: 54.44; identified by sequence similarity; putative.
  
     0.717
TM_0435
Acetyl xylan esterase-related protein; Similar to PID:2429094 percent identity: 86.08; identified by sequence similarity; putative.
 
   
 0.641
aguA
Alpha-glucuronidase; Alpha-glucuronidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose. It catalyzes the cleavage of alpha-(1->2)-glycosidic bond of the 4-O-methyl-D-glucuronic acid side chain of xylan and releases 4-O-methylglucuronic acid from xylan. Belongs to the glycosyl hydrolase 67 family.
  
     0.573
TM_0434
Alpha-glucosidase, putative; Similar to GP:2660637 percent identity: 75.79; identified by sequence similarity; putative.
       0.539
TM_0436
Alcohol dehydrogenase, zinc-containing; Similar to PIR:S34613 percent identity: 51.75; identified by sequence similarity; putative.
     
 0.534
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.