STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omp-alphaOuter membrane protein alpha; Links the outer membrane to the inner membrane. Long fibrous protein that could serve to separate the two membranes. (400 aa)    
Predicted Functional Partners:
TM_0990
Conserved hypothetical protein; Similar to GB:Pyro_h percent identity: 71.88; identified by sequence similarity; putative.
  
 0.805
TM_0682
Hypothetical protein; Identified by sequence similarity; putative.
  
     0.764
TM_0476
Hypothetical protein; Identified by sequence similarity; putative.
     
 0.754
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
     
 0.746
TM_1652
Hypothetical protein; Identified by sequence similarity; putative.
  
    0.735
TM_0942
Hypothetical protein; Identified by sequence similarity; putative.
  
     0.725
TM_1735
Conserved hypothetical protein; Similar to PID:1001350 PID:1001356 percent identity: 50.28; identified by sequence similarity; putative.
  
   
 0.702
TM_1117
General secretion pathway protein D, putative; Similar to GB:L13865 SP:P34750 PID:459551 percent identity: 47.19; identified by sequence similarity; putative; Belongs to the bacterial secretin family.
  
     0.661
TM_1866
Membrane bound protein LytR, putative; Similar to GB:M87645 SP:Q02115 PID:143156 PID:405621 GB:AL009126 percent identity: 52.26; identified by sequence similarity; putative.
  
   
 0.658
TM_0493
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.599
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.