STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM_0487Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 69.00; identified by sequence similarity; putative. (104 aa)    
Predicted Functional Partners:
prmC
hemK protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.817
iscU
Nitrogen fixation protein NifU-related protein; A scaffold on which IscS assembles Fe-S clusters. Subsequently gives the nascent cluster to other proteins. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters (By similarity). Belongs to the NifU family.
  
  
 0.806
TM_1368
ABC transporter, ATP-binding protein; Similar to GB:Pyro_h percent identity: 70.83; identified by sequence similarity; putative.
 
  
 0.690
TM_0486
Conserved hypothetical protein; Similar to GB:U04966 PID:498839 percent identity: 72.63; identified by sequence similarity; putative.
     
 0.687
TM_0483
ABC transporter, ATP-binding protein; Similar to GB:AE000782 percent identity: 66.35; identified by sequence similarity; putative.
     
 0.685
TM_0484
Pyrimidine precursor biosynthesis enzyme, putative; Similar to SP:P42883 SP:P43534 SP:P47183 PID:1015913 PID:1302455 percent identity: 52.16; identified by sequence similarity; putative.
     
 0.680
TM_0485
ABC transporter, permease protein, cysTW family; Similar to GB:L42023 PID:1003598 PID:1222281 PID:1204605 SP:Q57306 percent identity: 52.16; identified by sequence similarity; putative.
     
 0.680
csd
Aminotransferase, class V; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.531
TM_1370
Hypothetical protein; Identified by sequence similarity; putative.
 
   
 0.527
TM_1417
ABC transporter, ATP-binding protein; Similar to GB:L77117 SP:Q60350 PID:1590838 percent identity: 75.00; identified by sequence similarity; putative.
 
  
 0.446
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.