STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TM_0602Iron-dependent transcriptional repressor, putative; Similar to PID:1171107 PID:2182002 GB:AL123456 percent identity: 45.04; identified by sequence similarity; putative. (151 aa)    
Predicted Functional Partners:
TM_0599
Hypothetical protein; Identified by sequence similarity; putative.
 
    0.769
TM_0601
Hypothetical protein; Identified by sequence similarity; putative.
       0.719
TM_0510
Iron-dependent transcriptional repressor, putative; Similar to GP:2624310 percent identity: 62.63; identified by sequence similarity; putative.
  
     0.715
TM_0600
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 55.93; identified by sequence similarity; putative.
       0.709
TM_0598
Sugar ABC transporter, permease protein; Similar to PID:1652996 percent identity: 64.22; identified by sequence similarity; putative.
       0.681
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.580
ssb
Single stranded DNA-binding protein, putative; Similar to GB:AE000657 percent identity: 57.14; identified by sequence similarity; putative.
       0.580
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.535
TM_0125
Zinc ABC transporter, permease protein; Part of an ATP-driven transport system TM_0123/TM_0124/TM_0125 for a metal; Belongs to the ABC-3 integral membrane protein family.
  
 
 0.452
TM_0123
Zinc ABC transporter, periplasmic zinc-binding protein; Part of an ATP-driven transport system TM_0123/TM_0124/TM_0125 for a metal. Metal-binding component; Belongs to the bacterial solute-binding protein 9 family.
  
 
 0.442
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.