Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM_1020Hypothetical protein; Identified by sequence similarity; putative. (608 aa)    
Predicted Functional Partners:
TM_1019
Hypothetical protein; Identified by sequence similarity; putative.
      0.892
TM_1018
Hypothetical protein; Identified by sequence similarity; putative.
       0.655
TM_1021
Permease, putative; Similar to GP:2695718 percent identity: 100.00; identified by sequence similarity; putative.
       0.561
TM_1022
Esterase; Similar to GP:2695717 percent identity: 100.00; identified by sequence similarity; putative.
       0.561
TM_1023
Conserved hypothetical protein; Similar to PID:992558 percent identity: 53.12; identified by sequence similarity; putative.
       0.428
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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