STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TM_1115Hypothetical protein; Identified by sequence similarity; putative. (216 aa)    
Predicted Functional Partners:
TM_1114
Hypothetical protein; Identified by sequence similarity; putative.
      
0.621
TM_1116
Hypothetical protein; Identified by sequence similarity; putative.
       0.589
TM_1117
General secretion pathway protein D, putative; Similar to GB:L13865 SP:P34750 PID:459551 percent identity: 47.19; identified by sequence similarity; putative; Belongs to the bacterial secretin family.
       0.589
TM_1118
Hypothetical protein; Identified by sequence similarity; putative.
       0.589
TM_1113
Hypothetical protein; Identified by sequence similarity; putative.
      
0.571
TM_1112
Hypothetical protein; Identified by sequence similarity; putative.
       0.401
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.