Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM_1222Oligopeptide ABC transporter, permease protein; Similar to GB:Pyro_h percent identity: 79.57; identified by sequence similarity; putative. (329 aa)    
Predicted Functional Partners:
TM_1221
Oligopeptide ABC transporter, permease protein; Similar to GB:Pyro_h percent identity: 72.40; identified by sequence similarity; putative.
 
 0.984
TM_1220
Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:Pyro_h percent identity: 79.13; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 
 0.976
TM_1219
Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:Pyro_h percent identity: 74.92; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 
 0.967
TM_1223
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Similar to GB:Pyro_h percent identity: 59.08; identified by sequence similarity; putative.
 
   0.936
TM_1226
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, putative; Similar to GB:Pyro_h percent identity: 57.09; identified by sequence similarity; putative.
 
   0.889
TM_0029
Oligopeptide ABC transporter, permease protein; Similar to GB:Pyro_h percent identity: 70.18; identified by sequence similarity; putative.
   0.883
TM_0073
Oligopeptide ABC transporter, permease protein; Similar to PID:1491736 percent identity: 56.57; identified by sequence similarity; putative.
  
   0.870
TM_1218
Transcriptional regulator, LacI family; Similar to GB:AL009126 percent identity: 53.33; identified by sequence similarity; putative.
     
 0.869
TM_0302
Oligopeptide ABC transporter, permease protein; Similar to GB:Pyro_h percent identity: 57.09; identified by sequence similarity; putative.
 
   0.868
TM_1197
Oligopeptide ABC transporter, permease protein; Similar to GB:Pyro_h percent identity: 62.46; identified by sequence similarity; putative.
 
   0.863
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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