STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM_1227Endo-1,4-beta-mannosidase; Similar to PID:1679597 percent identity: 54.44; identified by sequence similarity; putative. (669 aa)    
Predicted Functional Partners:
TM_0296
Fructokinase; Similar to PID:1052973 percent identity: 57.14; identified by sequence similarity; putative.
     
  0.876
TM_1226
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, putative; Similar to GB:Pyro_h percent identity: 57.09; identified by sequence similarity; putative.
       0.773
TM_0305
Endoglucanase, putative; Similar to GP:3560020 percent identity: 55.11; identified by sequence similarity; putative.
 
     0.761
TM_0070
Endo-1,4-beta-xylanase B; Similar to PID:1143603 SP:Q60041 percent identity: 93.93; identified by sequence similarity; putative.
 
     0.742
pelA
Pectate lyase; Cleaves unsaturated trigalacturonate from pectin. Activity is highest towards polygalacturonic acid, activity on methylated pectins decreases with an increasing degree of methylation.
  
     0.717
TM_1225
Conserved hypothetical protein; Similar to GB:Pyro_h percent identity: 52.69; identified by sequence similarity; putative.
       0.684
TM_1224
Transcriptional regulator, XylR-related; Similar to PID:1208894 SP:Q44406 percent identity: 54.86; identified by sequence similarity; putative.
    
  0.666
TM_1752
Endoglucanase; Similar to SP:P23340 percent identity: 51.51; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.602
TM_1201
Arabinogalactan endo-1,4-beta-galactosidase, putative; Similar to GB:L03425 SP:P48843 PID:142574 percent identity: 66.76; identified by sequence similarity; putative.
 
     0.593
xynA
Similar to PID:559960 SP:Q60037 GB:AE000512 percent identity: 100.00; identified by sequence similarity; putative.
 
     0.557
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.