STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TM_1271Type IV pilin-related protein; Similar to SP:P35646 GB:Z12609 PID:41331 percent identity: 54.22; identified by sequence similarity; putative. (157 aa)    
Predicted Functional Partners:
TM_0094
General secretion pathway protein F, putative; Similar to GB:AE000657 percent identity: 58.04; identified by sequence similarity; putative.
 
  
 0.963
TM_0837
General secretion pathway protein E; Similar to GB:AE000657 percent identity: 67.38; identified by sequence similarity; putative.
 
 0.950
TM_0088
comE protein, putative; Similar to SP:P31772 GB:L42023 PID:1003754 PID:1222365 PID:148874 percent identity: 65.23; identified by sequence similarity; putative; Belongs to the bacterial secretin family.
 
  
 0.745
TM_1696
Type IV prepilin peptidase; Similar to GB:AE000657 percent identity: 61.90; identified by sequence similarity; putative.
 
  
 0.706
TM_1052
comEA protein-related protein; Similar to GB:L15202 SP:P39694 PID:289260 PID:1303796 GB:AL009126 percent identity: 75.81; identified by sequence similarity; putative.
  
  
 0.574
gatB
Glutamyl tRNA-Gln amidotransferase, subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln) (By similarity); Belongs to the GatB/GatE family. GatB subfamily.
   
   0.568
TM_0250
DNA processing chain A; Similar to GB:L42023 SP:P43862 PID:1006171 PID:1221098 PID:609332 percent identity: 61.21; identified by sequence similarity; putative.
  
  
 0.548
TM_1382
Conserved hypothetical protein; Similar to PID:1154634 SP:P50619 GB:AL009126 percent identity: 52.31; identified by sequence similarity; putative.
  
     0.531
TM_1362
Motility protein PilT; Similar to GB:AE000657 percent identity: 66.67; identified by sequence similarity; putative.
 
  
 0.524
ssb
Single stranded DNA-binding protein, putative; Similar to GB:AE000657 percent identity: 57.14; identified by sequence similarity; putative.
   
    0.522
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.