STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iscUNitrogen fixation protein NifU-related protein; A scaffold on which IscS assembles Fe-S clusters. Subsequently gives the nascent cluster to other proteins. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters (By similarity). Belongs to the NifU family. (142 aa)    
Predicted Functional Partners:
csd
Aminotransferase, class V; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.999
TM_1692
Aminotransferase, class V; Similar to SP:P12623 PID:142037 percent identity: 62.03; identified by sequence similarity; putative.
 0.999
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.956
TM_1370
Hypothetical protein; Identified by sequence similarity; putative.
 
  
 0.955
TM_1369
Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 74.45; identified by sequence similarity; putative.
 
  
 0.953
TM_1368
ABC transporter, ATP-binding protein; Similar to GB:Pyro_h percent identity: 70.83; identified by sequence similarity; putative.
  
  
 0.949
TM_0652
Conserved hypothetical protein; Similar to GP:2444077 percent identity: 54.90; identified by sequence similarity; putative.
   
 
 0.824
TM_1417
ABC transporter, ATP-binding protein; Similar to GB:L77117 SP:Q60350 PID:1590838 percent identity: 75.00; identified by sequence similarity; putative.
  
  
 0.774
TM_0487
Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 69.00; identified by sequence similarity; putative.
  
    0.754
TM_1416
Conserved hypothetical protein; Similar to GB:Pyro_h percent identity: 70.62; identified by sequence similarity; putative.
  
  
 0.727
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.