STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfConserved hypothetical protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (178 aa)    
Predicted Functional Partners:
rpsI
Ribosomal protein S9; Similar to SP:P07842 percent identity: 75.00; identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.892
rpmA
Ribosomal protein L27; Similar to GB:D13267 SP:P02427 PID:216637 PID:606123 GB:U00096 percent identity: 75.00; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.891
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.888
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. Belongs to the universal ribosomal protein uS4 family.
  
 
 0.885
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.885
rpmC
Ribosomal protein L29; Similar to SP:P38514 PID:437931 GB:AE000512 percent identity: 100.00; identified by sequence similarity; putative; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.885
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.884
rpsP
Ribosomal protein S16; Similar to SP:P21474 PID:2309081 GB:AL009126 percent identity: 73.03; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.884
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
    
 
 0.883
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.882
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.