STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TM_1665Hypothetical protein; Identified by sequence similarity; putative. (186 aa)    
Predicted Functional Partners:
ecfA1
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (Probable). Expression of the complex plus RibU in E.coli allows riboflavin uptake; uptake does not occur in the absence of RibU or the EcfA1A2T complex.
  
    0.814
def
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).
     
 0.812
TM_1352
Hypothetical protein; Identified by sequence similarity; putative.
 
     0.811
TM_1354
Inosine-5-monophosphate dehydrogenase-related protein; Similar to GB:L77117 SP:Q59011 PID:1592337 percent identity: 60.27; identified by sequence similarity; putative.
 
  
 0.811
surE
Stationary phase survival protein; Nucleotidase that preferentially dephosphorylates 5'-GMP and 5'-AMP.
       0.810
TM_1664
Conserved hypothetical protein; Similar to PID:1499712 GB:L77117 PID:1499712 percent identity: 66.33; identified by sequence similarity; putative.
       0.810
TM_1666
Succinyl-diaminopimelate desuccinylase, putative; Similar to GB:AE000782 percent identity: 71.21; identified by sequence similarity; putative.
     
 0.810
TM_1353
Hypothetical protein; Identified by sequence similarity; putative.
 
     0.797
TM_1355
Hypothetical protein; Identified by sequence similarity; putative.
 
     0.797
TM_0011
NADP-reducing hydrogenase, subunit B; Similar to GB:U07229 PID:466364 percent identity: 61.86; identified by sequence similarity; putative.
 
     0.771
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.