Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM_1682Conserved hypothetical protein; Similar to PID:558266 percent identity: 61.54; identified by sequence similarity; putative. (565 aa)    
Predicted Functional Partners:
TM_1788
Conserved hypothetical protein, GGDEF domain; Similar to GB:AE000657 percent identity: 60.13; identified by sequence similarity; putative.
 
   0.667
TM_0972
Conserved hypothetical protein, GGDEF domain; Similar to GB:AE000657 percent identity: 63.80; identified by sequence similarity; putative.
 
   0.626
TM_1680
Hypothetical protein; Identified by sequence similarity; putative.
       0.568
TM_1681
Hypothetical protein; Identified by sequence similarity; putative.
       0.568
TM_1184
pleD-related protein; Similar to PID:1652841 percent identity: 50.78; identified by sequence similarity; putative.
 
 
 0.477
csp
Cold shock protein; Similar to GP:2894098 percent identity: 100.00; identified by sequence similarity; putative.
       0.476
TM_1679
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57890 PID:1591152 percent identity: 58.19; identified by sequence similarity; putative.
       0.466
TM_1588
Conserved hypothetical protein, GGDEF domain; Similar to GB:AE000657 percent identity: 57.07; identified by sequence similarity; putative.
  
   0.425
TM_1163
Conserved hypothetical protein, GGDEF domain; Similar to GB:AE000657 percent identity: 57.24; identified by sequence similarity; putative.
  
   0.423
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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