STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TM_1729Outer membrane protein; Similar to SP:Q01969 GB:X68276 PID:49141 GB:AE000512 percent identity: 54.10; identified by sequence similarity; putative. (403 aa)    
Predicted Functional Partners:
TM_1735
Conserved hypothetical protein; Similar to PID:1001350 PID:1001356 percent identity: 50.28; identified by sequence similarity; putative.
 
     0.847
TM_0493
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.824
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.810
TM_1726
alanyl-tRNA synthetase-related protein; Similar to GB:L42023 SP:P43815 PID:1005831 PID:1220910 PID:1205062 percent identity: 71.84; identified by sequence similarity; putative.
 
     0.809
TM_1727
Hypothetical protein; Identified by sequence similarity; putative.
       0.783
TM_0682
Hypothetical protein; Identified by sequence similarity; putative.
  
     0.760
TM_0942
Hypothetical protein; Identified by sequence similarity; putative.
  
     0.731
TM_1652
Hypothetical protein; Identified by sequence similarity; putative.
  
    0.711
TM_1117
General secretion pathway protein D, putative; Similar to GB:L13865 SP:P34750 PID:459551 percent identity: 47.19; identified by sequence similarity; putative; Belongs to the bacterial secretin family.
  
     0.654
TM_1866
Membrane bound protein LytR, putative; Similar to GB:M87645 SP:Q02115 PID:143156 PID:405621 GB:AL009126 percent identity: 52.26; identified by sequence similarity; putative.
 
   
 0.651
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.