Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM_1816Conserved hypothetical protein; Similar to GB:Pyro_h percent identity: 65.04; identified by sequence similarity; putative. (124 aa)    
Predicted Functional Partners:
TM_1815
Ferredoxin; Similar to GB:L77117 SP:Q57699 PID:1499030 percent identity: 60.56; identified by sequence similarity; putative.
 
     0.832
TM_1291
Iron-sulfur cluster-binding protein; Similar to GB:AE000782 percent identity: 66.14; identified by sequence similarity; putative.
 
  
 0.788
TM_1292
Iron-sulfur cluster-binding protein, putative; Similar to GB:AE000782 percent identity: 63.06; identified by sequence similarity; putative.
 
  
 0.787
TM_1679
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57890 PID:1591152 percent identity: 58.19; identified by sequence similarity; putative.
 
     0.634
TM_0176
Conserved hypothetical protein; Similar to GB:AE000657 percent identity: 58.27; identified by sequence similarity; putative.
 
     0.482
TM_1812
Hypothetical protein; Identified by sequence similarity; putative.
       0.406
TM_1813
Hypothetical protein; Identified by sequence similarity; putative.
       0.406
TM_1814
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
       0.406
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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