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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyConserved hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (508 aa)    
Predicted Functional Partners:
TM_1860
Conserved hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
     
 0.834
rimO
Conserved hypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12.
  
    0.829
recA
DNA repair protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.827
TM_1863
Conserved hypothetical protein; Similar to GB:AE000657 percent identity: 66.67; identified by sequence similarity; putative.
       0.825
TM_1864
Hypothetical protein; Identified by sequence similarity; putative.
  
    0.816
TM_1861
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Similar to SP:P46322 PID:893358 PID:1842439 GB:AL009126 percent identity: 60.87; identified by sequence similarity; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.811
recX
recX protein, putative; Modulates RecA activity; Belongs to the RecX family.
       0.810
TM_0772
Conserved hypothetical protein; Similar to GB:D26185 SP:P37541 PID:467422 GB:AL009126 percent identity: 66.12; identified by sequence similarity; putative.
 
  
 0.750
pnp
Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.625
TM_0715
tRNA nucleotidyl transferase-related protein; Similar to GB:AE000657 percent identity: 56.71; identified by sequence similarity; putative; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
 
 0.608
Your Current Organism:
Thermotoga maritima
NCBI taxonomy Id: 243274
Other names: T. maritima MSB8, Thermotoga maritima DSM 3109, Thermotoga maritima MSB8, Thermotoga maritima str. MSB8, Thermotoga maritima strain MSB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.