node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TDE_2109 | cmk-2 | TDE_2109 | TDE_2080 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.790 |
TDE_2109 | infB | TDE_2109 | TDE_1106 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.507 |
TDE_2109 | pnp | TDE_2109 | TDE_1041 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.915 |
TDE_2109 | pyrG | TDE_2109 | TDE_2692 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.507 |
TDE_2109 | rho | TDE_2109 | TDE_1503 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.432 |
TDE_2109 | rpoA | TDE_2109 | TDE_0791 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.527 |
TDE_2109 | rpoB | TDE_2109 | TDE_2421 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.540 |
TDE_2592 | cmk-2 | TDE_2592 | TDE_2080 | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.790 |
TDE_2592 | infB | TDE_2592 | TDE_1106 | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.507 |
TDE_2592 | pnp | TDE_2592 | TDE_1041 | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.915 |
TDE_2592 | pyrG | TDE_2592 | TDE_2692 | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.507 |
TDE_2592 | rho | TDE_2592 | TDE_1503 | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.432 |
TDE_2592 | rpoA | TDE_2592 | TDE_0791 | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.527 |
TDE_2592 | rpoB | TDE_2592 | TDE_2421 | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.540 |
cmk-2 | TDE_2109 | TDE_2080 | TDE_2109 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | 0.790 |
cmk-2 | TDE_2592 | TDE_2080 | TDE_2592 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880. | 0.790 |
cmk-2 | guaA | TDE_2080 | TDE_1718 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.886 |
cmk-2 | infB | TDE_2080 | TDE_1106 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.890 |
cmk-2 | nusA | TDE_2080 | TDE_1107 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | N utilization substance protein A, putative; Participates in both transcription termination and antitermination. | 0.989 |
cmk-2 | pnp | TDE_2080 | TDE_1041 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.887 |