TDE_0136 protein (Treponema denticola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TDE_0136

Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1860. (118 aa)

Predicted Functional Partners:

TDE_0134

0.951

TDE_0135

0.950

TDE_2644

0.822

TDE_2643

0.792

TDE_0137

0.779

TDE_0138

0.725

TDE_0133

0.411

Your Current Organism:

Treponema denticola

NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
TDE_0133	TDE_0134	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	0.443
TDE_0133	TDE_0135	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	0.448
TDE_0133	TDE_0136	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1860.	0.411
TDE_0133	TDE_0137	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Carbohydrate kinase, FGGY family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.	0.591
TDE_0133	TDE_0138	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Alkyldihydroxyacetonephosphate synthase, putative; Identified by similarity to SP:O00116; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.700
TDE_0134	TDE_0133	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.443
TDE_0134	TDE_0135	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	0.968
TDE_0134	TDE_0136	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1860.	0.951
TDE_0134	TDE_0137	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	Carbohydrate kinase, FGGY family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.	0.805
TDE_0134	TDE_0138	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	Alkyldihydroxyacetonephosphate synthase, putative; Identified by similarity to SP:O00116; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.761
TDE_0134	TDE_2643	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	Oxidoreductase, FAD-dependent; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.	0.913
TDE_0134	TDE_2644	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	0.864
TDE_0135	TDE_0133	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.448
TDE_0135	TDE_0134	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	0.968
TDE_0135	TDE_0136	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1860.	0.950
TDE_0135	TDE_0137	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Carbohydrate kinase, FGGY family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.	0.776
TDE_0135	TDE_0138	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Alkyldihydroxyacetonephosphate synthase, putative; Identified by similarity to SP:O00116; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.764
TDE_0135	TDE_2643	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070.	Oxidoreductase, FAD-dependent; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.	0.898
TDE_0136	TDE_0133	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1860.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.411
TDE_0136	TDE_0134	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1860.	Oxidoreductase, FAD-dependent; Identified by similarity to GP:19713620; match to protein family HMM PF01266; match to protein family HMM PF04324.	0.951