STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_0308Hypothetical protein; Identified by Glimmer2; putative. (349 aa)    
Predicted Functional Partners:
TDE_0307
Hypothetical protein; Identified by Glimmer2; putative.
       0.690
TDE_0309
Lipoprotein, putative.
       0.675
TDE_0310
Hypothetical protein; Identified by Glimmer2; putative.
       0.675
sppA
Signal peptide peptidase SppA; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706.
       0.493
thyX
Thymidylate synthase-complementing family protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
       0.484
TDE_0312
Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933.
       0.454
TDE_0313
TrkA domain protein; Identified by similarity to GP:3288678; match to protein family HMM PF02254.
       0.436
TDE_0314
Conserved hypothetical protein; Identified by similarity to SP:O83174.
       0.428
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.424
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.