STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_0421Lipoprotein, putative; Identified by match to protein family HMM TIGR01781. (428 aa)    
Predicted Functional Partners:
TDE_0422
Bacteriocin-type signal domain protein.
       0.773
TDE_0420
Hypothetical protein; Identified by Glimmer2; putative.
      
0.757
TDE_0419
Hypothetical protein; Identified by Glimmer2; putative.
      
0.736
TDE_0423
Hypothetical protein; Identified by Glimmer2; putative.
      
0.570
TDE_0424
Bacteriocin-type signal domain protein.
       0.570
TDE_0425
Bacteriocin ABC transporter, ATP-binding/permease, putative; Identified by similarity to PIR:A39203; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.
       0.570
TDE_0426
Bacteriocin ABC transporter, bacteriocin-binding protein, putative.
       0.542
TDE_0427
Hypothetical protein; Identified by Glimmer2; putative.
       0.542
TDE_0418
Lipoprotein, putative.
      
0.491
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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