TDE_0631 protein (Treponema denticola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TDE_0631

Sigma factor regulatory protein, putative; Identified by similarity to SP:P40399. (708 aa)

Predicted Functional Partners:

TDE_0632

0.960

TDE_1122

0.922

TDE_2083

0.899

TDE_0630

0.845

TDE_0102

0.792

TDE_1008

0.783

TDE_1121

0.732

TDE_0128

0.714

TDE_2075

0.714

TDE_2479

0.700

Your Current Organism:

Treponema denticola

NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
TDE_0102	TDE_0128	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.845
TDE_0102	TDE_0630	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Sigma factor regulatory protein, putative; Identified by similarity to SP:P40399.	0.763
TDE_0102	TDE_0631	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Sigma factor regulatory protein, putative; Identified by similarity to SP:P40399.	0.792
TDE_0102	TDE_0632	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.912
TDE_0102	TDE_1008	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Flagellar protein, putative; Identified by similarity to SP:P57427.	0.855
TDE_0102	TDE_1122	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.891
TDE_0102	TDE_2075	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; match to protein family HMM TIGR01612.	0.845
TDE_0102	TDE_2083	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.930
TDE_0102	TDE_2479	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Conserved domain protein; Identified by similarity to GP:9107052.	0.841
TDE_0128	TDE_0102	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	0.845
TDE_0128	TDE_0630	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sigma factor regulatory protein, putative; Identified by similarity to SP:P40399.	0.714
TDE_0128	TDE_0631	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sigma factor regulatory protein, putative; Identified by similarity to SP:P40399.	0.714
TDE_0128	TDE_0632	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.703
TDE_0128	TDE_1008	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Flagellar protein, putative; Identified by similarity to SP:P57427.	0.767
TDE_0128	TDE_1121	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Hypothetical protein; Identified by Glimmer2; putative.	0.787
TDE_0128	TDE_1122	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.703
TDE_0128	TDE_2075	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; match to protein family HMM TIGR01612.	0.863
TDE_0128	TDE_2083	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.703
TDE_0128	TDE_2479	HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Conserved domain protein; Identified by similarity to GP:9107052.	0.879
TDE_0630	TDE_0102	Sigma factor regulatory protein, putative; Identified by similarity to SP:P40399.	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	0.763