STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_0804Conserved hypothetical protein; Identified by similarity to GP:6002200; match to protein family HMM PF01139. (375 aa)    
Predicted Functional Partners:
TDE_2109
ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family.
   
 0.589
TDE_2592
DbpA RNA binding domain protein; Identified by match to protein family HMM PF03880.
   
 0.589
TDE_0805
Hypothetical protein; Identified by Glimmer2; putative.
       0.478
TDE_0096
NADH oxidase; Identified by similarity to GP:1199958; match to protein family HMM PF00070; match to protein family HMM PF02852.
   
   0.434
TDE_0153
Coenzyme A disulfide reductase, putative; Identified by similarity to GP:2792490; match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852.
   
   0.434
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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