STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_1438Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534. (356 aa)    
Predicted Functional Partners:
TDE_1431
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.860
TDE_1427
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.857
TDE_1439
Epimerase/dehydratase, putative; Identified by similarity to SP:Q56623.
  
  
 0.821
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.817
rfbB
dTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P37759; match to protein family HMM PF01370; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.803
TDE_1437
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00535.
 
 
 0.786
TDE_1435
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.630
TDE_1429
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
 
 0.614
TDE_1436
Inner membrane protein; Identified by similarity to OMNI:BB0442; match to protein family HMM PF02096.
       0.605
TDE_1433
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
 
 0.597
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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