STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_1663OmpA family protein; Identified by similarity to SP:P38369; match to protein family HMM PF00691. (167 aa)    
Predicted Functional Partners:
TDE_1988
Conserved hypothetical protein; Identified by similarity to SP:O83326.
 
 
 0.873
TDE_1664
Conserved domain protein; Identified by similarity to OMNI:NTL02SC6422.
 
     0.871
TDE_2709
BNR domain protein; Identified by match to protein family HMM PF02012; match to protein family HMM TIGR01612.
 
 
   0.770
TDE_1053
Lipoprotein, putative; Identified by similarity to OMNI:TP0622.
  
 
 
 0.760
TDE_2566
Conserved domain protein; Identified by similarity to SP:O83637.
 
    0.757
TDE_1985
Hypothetical protein; Identified by Glimmer2; putative.
 
 
   0.756
TDE_2281
LysM domain protein; Identified by match to protein family HMM PF01476.
 
    0.755
TDE_1092
Conserved hypothetical protein; Identified by similarity to OMNI:TP0990; match to protein family HMM PF00515; match to protein family HMM TIGR01612.
 
   
 0.746
TDE_0086
Conserved hypothetical protein; Identified by similarity to SP:O83870; match to protein family HMM TIGR01612.
 
     0.736
TDE_2694
Conserved hypothetical protein; Identified by similarity to OMNI:TP0020.
  
     0.735
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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