STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_1707Conserved hypothetical protein; Identified by similarity to OMNI:TP0253; match to protein family HMM PF04519. (138 aa)    
Predicted Functional Partners:
cutE-1
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
     0.820
TDE_1709
DNA-binding protein, HU family; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.
       0.809
cinA
Competence/damage-inducible protein CinA; Identified by similarity to SP:P46323; match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.
       0.773
TDE_1888
Conserved hypothetical protein; Identified by similarity to OMNI:TP0267; match to protein family HMM PF04519.
  
     0.771
fliY
Flagellar motor switch protein FliY; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
 
 0.729
TDE_0111
Conserved hypothetical protein; Identified by similarity to OMNI:TP0048; match to protein family HMM PF04519.
  
     0.715
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.631
TDE_1711
RelA/SpoT domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF04607.
       0.434
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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