Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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TDE_2000ABC transporter, ATP-binding/permease protein, HlyB family; Identified by similarity to SP:Q03203; match to protein family HMM PF00005; match to protein family HMM PF00664. (566 aa)    
Predicted Functional Partners:
TDE_1998
Identified by similarity to SP:P18159; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
     
 0.793
TDE_0025
Conserved hypothetical protein; Identified by similarity to SP:O83563.
      
 0.618
TDE_1221
Identified by match to protein family HMM PF00933.
      
 0.618
TDE_1514
Permease domain protein; Identified by match to protein family HMM PF02687.
      
 0.618
TDE_1971
DNA polymerase III domain protein; Identified by similarity to SP:P37540.
      
 0.618
TDE_0426
Bacteriocin ABC transporter, bacteriocin-binding protein, putative.
  
 
 0.533
TDE_0720
Bacteriocin ABC transporter, bacteriocin-binding protein, putative.
  
 
 0.533
TDE_2430
Bacteriocin ABC transporter, bacteriocin-binding protein, putative.
  
 
 0.533
TDE_1999
DNA polymerase III domain protein; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.
       0.481
TDE_2440
ABC transporter, ATP-binding/permease protein, putative; Identified by match to protein family HMM PF00005.
  
 
   0.480
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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