STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_2002Hypothetical protein; Identified by Glimmer2; putative. (198 aa)    
Predicted Functional Partners:
TDE_2001
Oligoendopeptidase F, putative; Identified by match to protein family HMM PF01432.
       0.678
TDE_1185
Lipoprotein, putative.
    
 
 0.594
TDE_2313
Hypothetical protein; Identified by Glimmer2; putative.
    
 
 0.594
TDE_2003
Internalin-related protein; Identified by similarity to SP:P25146; match to protein family HMM PF00560.
       0.532
TDE_1510
Membrane protein, putative; Identified by similarity to GP:19714880; match to protein family HMM PF03239.
   
  
 0.497
TDE_2004
Hypothetical protein; Identified by Glimmer2; putative.
       0.405
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.