Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TDE_2003Internalin-related protein; Identified by similarity to SP:P25146; match to protein family HMM PF00560. (424 aa)    
Predicted Functional Partners:
TDE_2004
Hypothetical protein; Identified by Glimmer2; putative.
       0.570
TDE_2005
Conserved hypothetical protein; Identified by similarity to OMNI:EF0579.
       0.559
hbpB
Hemin-binding protein B; Identified by similarity to GP:14595292.
  
    0.550
TDE_2002
Hypothetical protein; Identified by Glimmer2; putative.
       0.532
TDE_2137
Conserved hypothetical protein; Identified by similarity to GP:19714082; match to protein family HMM TIGR01612.
 
     0.507
TDE_1362
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.478
TDE_2001
Oligoendopeptidase F, putative; Identified by match to protein family HMM PF01432.
       0.473
TDE_2056
Outer membrane hemin-binding protein A; Identified by similarity to GP:14578638.
   
    0.430
TDE_2143
Penicillin-binding protein; Identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912.
  
     0.422
TDE_2006
Membrane protein, putative.
       0.402
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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