STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_2274Conserved hypothetical protein; Identified by similarity to OMNI:TP0829; match to protein family HMM PF04460. (291 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.839
TDE_1460
Conserved domain protein; Identified by similarity to SP:O83209.
  
     0.774
TDE_1919
Conserved domain protein.
  
     0.774
TDE_2617
Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00515.
  
     0.773
TDE_2353
Flagellar hook-associated protein 3; Identified by similarity to OMNI:TP0659; match to protein family HMM PF00669.
  
 
   0.772
TDE_2699
Antigen, putative; Identified by similarity to GP:436320.
  
     0.772
TDE_2751
Conserved hypothetical protein; Identified by similarity to OMNI:TP0996.
  
     0.772
TDE_2607
Conserved hypothetical protein; Identified by similarity to OMNI:TP0333.
  
     0.769
TDE_0446
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.767
TDE_2433
Treponemal membrane protein, putative; Identified by similarity to SP:P29720.
  
     0.765
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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