Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TDE_2300 | TDE_2301 | TDE_2300 | TDE_2301 | Trypsin domain/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | FlhB domain protein. | 0.535 |
TDE_2300 | TDE_2302 | TDE_2300 | TDE_2302 | Trypsin domain/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | HD domain protein; Identified by match to protein family HMM PF01966. | 0.503 |
TDE_2300 | TDE_2303 | TDE_2300 | TDE_2303 | Trypsin domain/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Conserved hypothetical protein; Identified by similarity to SP:O83883; match to protein family HMM PF02021; Belongs to the UPF0102 family. | 0.508 |
TDE_2300 | TDE_2304 | TDE_2300 | TDE_2304 | Trypsin domain/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Hypothetical protein; Identified by Glimmer2; putative. | 0.503 |
TDE_2300 | TDE_2305 | TDE_2300 | TDE_2305 | Trypsin domain/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Conserved hypothetical protein; Identified by similarity to OMNI:BB0701. | 0.503 |
TDE_2301 | TDE_2300 | TDE_2301 | TDE_2300 | FlhB domain protein. | Trypsin domain/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.535 |
TDE_2301 | TDE_2302 | TDE_2301 | TDE_2302 | FlhB domain protein. | HD domain protein; Identified by match to protein family HMM PF01966. | 0.766 |
TDE_2301 | TDE_2303 | TDE_2301 | TDE_2303 | FlhB domain protein. | Conserved hypothetical protein; Identified by similarity to SP:O83883; match to protein family HMM PF02021; Belongs to the UPF0102 family. | 0.766 |
TDE_2301 | TDE_2304 | TDE_2301 | TDE_2304 | FlhB domain protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.723 |
TDE_2301 | TDE_2305 | TDE_2301 | TDE_2305 | FlhB domain protein. | Conserved hypothetical protein; Identified by similarity to OMNI:BB0701. | 0.729 |
TDE_2301 | flgG-1 | TDE_2301 | TDE_1006 | FlhB domain protein. | Flagellar basal-body rod protein FlgG; Identified by similarity to SP:P16439; match to protein family HMM PF00460. | 0.727 |
TDE_2301 | fliW | TDE_2301 | TDE_2354 | FlhB domain protein. | Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.456 |
TDE_2301 | fliY | TDE_2301 | TDE_2762 | FlhB domain protein. | Flagellar motor switch protein FliY; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.613 |
TDE_2301 | rho | TDE_2301 | TDE_1503 | FlhB domain protein. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.534 |
TDE_2301 | rnhB | TDE_2301 | TDE_1547 | FlhB domain protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.514 |
TDE_2302 | TDE_2300 | TDE_2302 | TDE_2300 | HD domain protein; Identified by match to protein family HMM PF01966. | Trypsin domain/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.503 |
TDE_2302 | TDE_2301 | TDE_2302 | TDE_2301 | HD domain protein; Identified by match to protein family HMM PF01966. | FlhB domain protein. | 0.766 |
TDE_2302 | TDE_2303 | TDE_2302 | TDE_2303 | HD domain protein; Identified by match to protein family HMM PF01966. | Conserved hypothetical protein; Identified by similarity to SP:O83883; match to protein family HMM PF02021; Belongs to the UPF0102 family. | 0.833 |
TDE_2302 | TDE_2304 | TDE_2302 | TDE_2304 | HD domain protein; Identified by match to protein family HMM PF01966. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
TDE_2302 | TDE_2305 | TDE_2302 | TDE_2305 | HD domain protein; Identified by match to protein family HMM PF01966. | Conserved hypothetical protein; Identified by similarity to OMNI:BB0701. | 0.842 |
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