STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDE_2362Hypothetical protein; Identified by Glimmer2; putative. (169 aa)    
Predicted Functional Partners:
TDE_2359
DAK2 domain protein; Identified by similarity to GP:15082276; match to protein family HMM PF02734.
 
     0.807
TDE_2360
Identified by match to protein family HMM PF02733.
 
     0.807
TDE_2361
High-affinity branched chain amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF01094.
 
     0.805
TDE_2358
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the uroporphyrinogen decarboxylase family.
 
     0.781
TDE_2363
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
       0.778
TDE_2364
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
       0.777
TDE_2365
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.776
TDE_2366
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.776
TDE_2368
YbaK/prolyl-tRNA synthetase domain protein; Identified by match to protein family HMM PF04073.
 
     0.535
TDE_1002
Membrane protein, putative.
  
     0.447
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.