Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
TP_0706 | TP_0707 | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 36.30; identified by sequence similarity; putative. | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | 0.592 |
TP_0706 | TP_0708 | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 36.30; identified by sequence similarity; putative. | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | 0.436 |
TP_0707 | TP_0706 | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 36.30; identified by sequence similarity; putative. | 0.592 |
TP_0707 | TP_0708 | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | 0.556 |
TP_0707 | TP_0709 | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | RNA polymerase sigma-28 factor; Similar to GB:J03169 SP:P17211 PID:153486 PID:153487 percent identity: 47.79; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. | 0.442 |
TP_0707 | TP_0710 | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | Conserved hypothetical protein; Similar to PID:1165252 GB:AE000783 percent identity: 32.48; identified by sequence similarity; putative. | 0.439 |
TP_0708 | TP_0706 | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 36.30; identified by sequence similarity; putative. | 0.436 |
TP_0708 | TP_0707 | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | 0.556 |
TP_0708 | TP_0709 | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | RNA polymerase sigma-28 factor; Similar to GB:J03169 SP:P17211 PID:153486 PID:153487 percent identity: 47.79; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. | 0.601 |
TP_0708 | TP_0710 | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | Conserved hypothetical protein; Similar to PID:1165252 GB:AE000783 percent identity: 32.48; identified by sequence similarity; putative. | 0.596 |
TP_0709 | TP_0707 | RNA polymerase sigma-28 factor; Similar to GB:J03169 SP:P17211 PID:153486 PID:153487 percent identity: 47.79; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | 0.442 |
TP_0709 | TP_0708 | RNA polymerase sigma-28 factor; Similar to GB:J03169 SP:P17211 PID:153486 PID:153487 percent identity: 47.79; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | 0.601 |
TP_0709 | TP_0710 | RNA polymerase sigma-28 factor; Similar to GB:J03169 SP:P17211 PID:153486 PID:153487 percent identity: 47.79; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. | Conserved hypothetical protein; Similar to PID:1165252 GB:AE000783 percent identity: 32.48; identified by sequence similarity; putative. | 0.862 |
TP_0710 | TP_0707 | Conserved hypothetical protein; Similar to PID:1165252 GB:AE000783 percent identity: 32.48; identified by sequence similarity; putative. | Predicted coding region TP0707; Hypothetical protein; identified by Glimmer; putative. | 0.439 |
TP_0710 | TP_0708 | Conserved hypothetical protein; Similar to PID:1165252 GB:AE000783 percent identity: 32.48; identified by sequence similarity; putative. | Predicted coding region TP0708; Hypothetical protein; identified by Glimmer; putative. | 0.596 |
TP_0710 | TP_0709 | Conserved hypothetical protein; Similar to PID:1165252 GB:AE000783 percent identity: 32.48; identified by sequence similarity; putative. | RNA polymerase sigma-28 factor; Similar to GB:J03169 SP:P17211 PID:153486 PID:153487 percent identity: 47.79; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. | 0.862 |