STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tprBTpr protein B (tprB); Similar to GP:2196926 percent identity: 37.13; identified by sequence similarity; putative. (660 aa)    
Predicted Functional Partners:
TP_0012
Predicted coding region TP0012; Hypothetical protein; identified by Glimmer; putative.
       0.773
TP_0013
Predicted coding region TP0013; Hypothetical protein; identified by Glimmer; putative.
       0.773
TP_0014
Predicted coding region TP0014; Hypothetical protein; identified by Glimmer; putative.
       0.773
TP_0010
Predicted coding region TP0010; Hypothetical protein; identified by Glimmer; putative.
       0.661
pheT
phenylalanyl-tRNA synthetase beta subunit (pheT); Similar to GP:1785608 percent identity: 39.93; identified by sequence similarity; putative.
       0.449
lon1
ATP-dependent protease LA (lon-1); Similar to GB:L42023 SP:P43865 PID:1007316 PID:1221456 PID:1205562 percent identity: 30.50; identified by sequence similarity; putative.
       0.449
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.