STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oadBOxaloacetate decarboxylase, subunit beta (oadB); Similar to GB:M96434 SP:Q03031 PID:154198 percent identity: 61.56; identified by sequence similarity; putative. (469 aa)    
Predicted Functional Partners:
oadA
Oxaloacetate decarboxylase, subunit alpha (oadA); Similar to GB:J03885 SP:P13187 PID:149289 percent identity: 50.93; identified by sequence similarity; putative.
  
 
 0.999
TP_0055
Predicted coding region TP0055; Hypothetical protein; identified by Glimmer; putative.
  
 0.995
TP_0939
Pyruvate oxidoreductase; Similar to PID:1001780 SP:P52965 PID:1006618 percent identity: 58.44; identified by sequence similarity; putative.
    
 0.966
ppdK
Pyruvate, phosphate dikinase; Catalyzes the reversible phosphorylation of pyruvate and phosphate; Belongs to the PEP-utilizing enzyme family.
    
 0.945
pckG
Phosphoenolpyruvate carboxykinase (pckA); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP); Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
     
 0.939
pta
Phosphate acetyltransferase (pta); Similar to GB:L23147 SP:P38503 PID:349833 percent identity: 42.30; identified by sequence similarity; putative.
     
 0.645
accC
Phosphoribosylglycinamide formyltransferase, putative; Similar to GB:X78962 SP:P39771 PID:534939 GB:AL009126 percent identity: 30.04; identified by sequence similarity; putative.
     
 0.575
mgtE
Mg2+ transport protein (mgtE); Acts as a magnesium transporter.
   
   0.493
rnfC
Nitrogen fixation protein (rnfC); Similar to GB:X72888 GB:X79064 PID:435525 PID:483572 PID:1905810 percent identity: 27.00; identified by sequence similarity; putative.
  
  
  0.484
spoU1
Conserved hypothetical protein; Similar to GB:U14003 SP:P39290 PID:537021 GB:U00096 PID:1790623 percent identity: 31.43; identified by sequence similarity; putative; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.431
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.