STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpBSugar ABC transporter, periplasmic binding protein (y4oP); Similar to SP:P55601 PID:2182560 percent identity: 23.29; identified by sequence similarity; putative. (469 aa)    
Predicted Functional Partners:
ugpA
Sugar ABC transporter, permease protein (y4oQ); Similar to SP:P55602 PID:2182561 percent identity: 35.94; identified by sequence similarity; putative.
 
 0.999
TP_0076
Sugar ABC transporter, permease protein (y4oR); Similar to SP:P55603 PID:2182562 percent identity: 35.38; identified by sequence similarity; putative.
 
 0.999
TP_0804
Sugar ABC transporter, ATP-binding protein (ugpC); Similar to SP:P10907 GB:U00039 PID:43249 PID:912455 GB:U00096 percent identity: 47.77; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
  
 0.986
msmE
Sugar ABC transporter, periplasmic binding protein (msmE); Similar to GP:2293308 percent identity: 22.83; identified by sequence similarity; putative.
  
  
 0.794
TP_0309
Amino acid ABC transporter, periplasmic binding protein; Similar to SP:P42199 PID:666981 GB:AL009126 percent identity: 25.87; identified by sequence similarity; putative.
 
 
 0.539
cheY
Chemotaxis response regulator (cheY); Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. CheY seems to regulate the clockwise (CW) rotation (By similarity).
    
 0.483
TP_0308
Amino acid ABC transporter, periplasmic binding protein (hisJ); Similar to GB:J01805 SP:P02910 GB:V01372 GB:V01373 GB:X52093 percent identity: 24.37; identified by sequence similarity; putative.
  
 
 0.478
coxM
Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 26.50; identified by sequence similarity; putative.
 
     0.463
dnaZX1
DNA polymerase III, gamma and tau subunits, putative; Similar to GB:D26185 SP:P09122 GB:X06803 GB:X17014 PID:467409 percent identity: 33.92; identified by sequence similarity; putative.
    
  0.461
dnaZX2
DNA polymerase III, subunits gamma and tau (dnaH); DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Belongs to the DnaX/STICHEL family.
    
  0.461
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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