STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ugpASugar ABC transporter, permease protein (y4oQ); Similar to SP:P55602 PID:2182561 percent identity: 35.94; identified by sequence similarity; putative. (296 aa)    
Predicted Functional Partners:
ugpB
Sugar ABC transporter, periplasmic binding protein (y4oP); Similar to SP:P55601 PID:2182560 percent identity: 23.29; identified by sequence similarity; putative.
 
 0.999
TP_0076
Sugar ABC transporter, permease protein (y4oR); Similar to SP:P55603 PID:2182562 percent identity: 35.38; identified by sequence similarity; putative.
 
 0.999
TP_0804
Sugar ABC transporter, ATP-binding protein (ugpC); Similar to SP:P10907 GB:U00039 PID:43249 PID:912455 GB:U00096 percent identity: 47.77; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 0.999
msmE
Sugar ABC transporter, periplasmic binding protein (msmE); Similar to GP:2293308 percent identity: 22.83; identified by sequence similarity; putative.
 
 0.988
potC
Spermidine/putrescine ABC transporter, permease protein (potC); Similar to GB:L42023 SP:P45169 PID:1007355 PID:1221477 PID:1205581 percent identity: 40.16; identified by sequence similarity; putative.
    
  0.751
potD
Spermidine/putrescine ABC transporter, periplasmic binding protein (potD); Similar to GB:M64519 SP:P23861 PID:147329 GB:U00096 PID:1651550 percent identity: 31.38; identified by sequence similarity; putative.
    
  0.751
sbcC
Exonuclease (sbcC); SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity (By similarity); Belongs to the SMC family. SbcC subfamily.
     
  0.690
potB
Spermidine/putrescine ABC transporter, permease protein (potB); Similar to GB:AE000782 percent identity: 29.22; identified by sequence similarity; putative.
     
  0.690
TP_0142
Thiamine ABC transporter, ATP-binding protein, putative; Similar to GB:L42023 SP:P45171 PID:1007359 PID:1221479 PID:1205583 percent identity: 36.19; identified by sequence similarity; putative.
    
 0.573
potA
Spermidine/putrescine ABC transporter, ATP-binding protein (potA); Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
    
 0.573
Your Current Organism:
Treponema pallidum
NCBI taxonomy Id: 243276
Other names: T. pallidum subsp. pallidum str. Nichols, Treponema pallidum Nichols, Treponema pallidum subsp. pallidum str. Nichols
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